INDUCTION OF INSTABILITY AT SELECTED . LOCI IN MAIZE BARBARA McCLINTOCK Department of Genetics, Carnegie Institution of Washington, Cold Spring Harbor, N. Y. Received April 14, 1953 JX previous reports (McC.iinTocx 1950, 1951), studies of the origin and expression of genic instability at a number of known loci in the maize chromosomes were summarized. It was concluded that changes in genic expres- sion result from chromosome alterations at the locus of a gene and these are initiated by. units other than those composing the gene itself. The mutations are considered, therefore, not as changes in the potentials of genic action, but rather chromosomal modifications at the locus effecting the kind and the degree of genic expression. The extragenic chromatin units have specificity in that differences among them may be recognized. Each exerts a specific type of con- trol of the action of the gene with which it becomes associated. These units may be transposed from one location to another within the chromosome com- plement. When incorporated at a new location, each expresses its mode of control of the action of the associated gene, and in a manner similar to that which occurred at the former location. These conclusions have been supported by extensive examination of the action of one particular system that has modi- fied genic action at a number of different loci. It is the so-called Dissociation- Activator (Ds-Ac) two-unit system. Both Ds and 4c are single chromosomal units. Their locations in particular chromosomes may be determined by linkage relations to other established markers. Each, however, may move from one location to another within the chromosomal complement. Such transpositions of Ds or Ac, or both, may occur in a few sporogenous cells. Consequently, a few gametes may be formed with Ds or Ac, or both, located at new positions. Following such transposition, each remains at the new location until, in a subsequent cell or plant generation, transposition to another location again occurs. Either may be inserted at vari- ous locations within the complement. It has been determined that the process of transposition involves some initial change at either Ds or Ac that can result in chromosome breaks and fusions. It has also been learned that in order for transposition of Ds to occur, 4c must be present in the nucleus. Besides trans- position, there are other known consequences of events initiated by Ds and again, these appear only when 4c is also present in the nucleus. They are dicentric chromatid formation, deficiency, duplication of segments, inversions, ring-chromosomes and reciprocal translocations between chromosomes. In all of these cases, the chromosome breaks are produced as the consequence of some initial change involving the Ds unit. Genetics 38: 579 November 1953. 580 BARBARA McCLINTOCK When Ds is transposed to the locus of a known gene, it may immediately or subsequently affect its action. This is expressed either by partial or complete inhibition, or by a previously unrecognized type of altered genic expression. As long as Ds remains in this position, genic action is subject to further change. It has been possible to determine that the subsequent changes are reflections of alterations occurring at the locus, and these are initiated by Ds. No Ds-initiated changes will occur, however, unless Ac is also present in the nucleus. If 4c is absent, no further modification of genic action occurs. The mutation present at the time of removal of 4c will be stable in expression in subsequent generations until Ac is again introduced into a zygote. In some cells of the plant arising from this zygote, alterations at the locus of the gene, initiated by Ds, again will occur. Some of these may result in further modifi- cations of genic action—that is, new mutations. Both the initial mutation and subsequent mutations are expressions, therefore, of interaction between Ds and Ac. Thus, these two chromosomal units comprise a nuclear system capable of controlling genic expression; Ds initiates changes in genic expression and tc controls when they will occur. Since Ds may enter various locations in the chromosome complement, 4c-controlled mutability can be expected to arise at a number of different loci of known genic action. In previous reports, the origin and subsequent behavior of 4c-controlled mutability at the C, Bs and "x loci in the short arm of chromosome 9 were described. It is the purpose of this paper to indicate that, in conformity with expectation, 4c-controlled mutability can appear at other loci of known genic action. It will also be shown that this type of control of instability may be obtained at selected loci. To test the prediction that genic instability under the control of 4c may be obtained at selected loci, two, considered to be particularly favorable for initial tests, were selected. These are the locus of 4; in chromosome 3 long arm, and that of 42 in chromosome 5 short arm. The genetically active components at these two loci affect anthocyanin pigment formation in both the plant tissues and in the aleurone layer of the kernel. The known recessive alleles are desig- nated a; and a». When either is homozygous, no anthocyanin pigment is devel- oped in the plant tissues or in the aleurone laver. Both recessives are stable in the presence of Ac; tests designed to show whether or not mutations of a, or a would occur when Ac was present in the nucleus were negative, Conse- quently, it was possible to perform the following experiment. A number of plants were grown that had a Ds unit located in the long arm of one chromo- some 5 and an Ac unit located in another chromosome of the complement. All plants were homozygous for 4, and Shy and for 4, and Bmy,. (Shz, normal development of endosperm; she, shrunken endosperm, located a quarter of a crossover unit distal to 4;. But, colorless secondary cell walls in plant tissues : bm, brown mid-rib, brown color in secondary cell walls; located 6 crossover units proximal to 4s and in same arm of chromosome 5.) The silks of some of these plants received pollen from plants homozygous for ay, Shy and Ay. The silks of other plants received pollen from plants homozygous for ag, bm and 44. None of the plants used as pollen parents carried 4c. The ears resulting from INSTABILITY AT SELECTED LOCI IN MAIZE 581 these crosses were examined to determine if any kernels exhibiting variegation for aleurone color were present. If a sufficiently large number of ears were obtained from the described crosses, one or more variegated kernels should appear. This conclusion is based on the following reasoning. In plants carrying Ds and Ac, transposition of Ds may. occur in a few sporogenous cells. Should one such transposition insert Ds at the locus of A, total or partial inhibition of 4; action could result. The gametophyte and consequently the gametes derived from this sporogenous cell could carry an 4, locus with a Ds-initiated altered capacity for action. Should Ac also he present, further Ds-initiated changes at the locus could occur in some cells during development of the kernel that arises from functioning of this gametophyte. In the progeny of such cells, these subsequent changes in 4, action could be expressed if the pollen parent had contributed the recessive, a,, which is stable in the presence of Ac. The aleurone layer of the mature kernel would exhibit a variegated pattern of anthocyanin pigmentation, either with respect to presence and absence of pigmentation, or to intensities of pig- mentation, or both. This kernel could then be removed from the ear, a plant grown from it and tests conducted with this plant and its progeny to determine whether or not the variegation is an expression of instability at the 1, locus and, if so, whether this instability is 4c-controlled. In a similar manner, alter- ations at the 4» locus that arise in the Ds and Ac carrying plants could be detected if the pollen parent contributed the stable recessive, a». In order to establish that the unstable state in either case originates in the Ds and de carrying plant, it is necessary for one of the parents to introduce a second, closely linked genetic marker. In progeny tests, linkage of unstable 4; with Shy or of unstable 4 with But, would indicate inception of instability in the Ds and .dc carrying parent plant. Seventy-one ears were obtained from the cross in which the pollen parent had contributed a,. One kernel was found that clearly exhibited variegation for aleurone color. There were no colorless kernels on any of these ears. Among the 120 ears obtained when az had been introduced by the pollen parent, three kernels exhibiting variegation for aleurone color appeared, each on a different ear. Again, there were no colorless kernels on any of these ears. Plants were grown from all four variegated kernels and tests initiated with each to deter- mine the nature of the instability being expressed. The progeny, in turn, were further tested. From these studies, the following was determined. In the varie- gated kernel that had received a, from the pollen parent, and in the plant de- rived from it, instability of genic action at the locus of 4, was being expressed. The alteration responsible for this instability occurred at the locus of 4, in one of the chromosomes 3 of the Ds-de carrying female parent. Mutations at this modified 4; locus, designated a,""*, occur only when Ac is present. In the plants derived from the three variegated kernels that appeared when az had been the pollen parent, the nature of the alteration at 42 could be determined in only two of them. This was because in one of them, the chromosome 5 con- tributed by the Ds-.4c carrying female parent was not transmitted to the next 582 BARBARA McCLINTOCK generation either through pollen or egg. Thus, no definite conclusions may be drawn concerning the nature of the instability, presumably at the A», locus, that was exhibited in the kernel from which this plant arose. In the two re- maining plants, it could be shown that it was the 4» locus in the chromosome 5 contributed by the female parent that had been modified. In one plant, the mutations occurring at this locus proved to be Ac-controlled. This mutable locus is designated a,”*. In the second plant, the mutations were not Ac-con- trolled. This mutable locus is designated ag”"3, Some of the methods used to determine whether or not mutation at a par- ticular known locus is 4c-controlled will be outlined. For illustrative purposes, the 4; locus has been chosen. Four independent inceptions of instability at 4, have been detected in the Cold Spring Harbor cultures. Two of them, a,” and a,”*, are not Ac-controlled. Two of them, however, a,”"3 and a", are Ac-controlled. Both of the latter had their inception in plants homozygous for the normal 4; locus and in which both Ds and Ac were present. The desig- nation a,""4 was given to the case whose origin was outlined above. In this report, the methods used to analyze the factors responsible for mutation at a,""* will be considered. These same methods, however, have been used to analyze all cases of Ac-controlled mutability. It is because of the very close linkage of She to a;”*, allowing the latter to be readily followed in progeny tests, that instability at the 4, locus has been selected for illustrative purposes. In considering 4c-controlled mutability, the following facts should be kept in mind. Mutations will occur only when Ac is present in the nucleus. In the absence of Ac, the modified genic action at the locus is stable. Instability, how- ever, will return if Ac is again introduced into a nucleus having this modified locus. Ac controls when mutations will occur; the higher the dose of Ac, the later the time during the development of a tissue when mutations at the affected locus will occur. Ac is inherited as a single unit. Transpositions or alterations of Ac, however, may occur in a few sporogenous cells resulting in loss to one of two sister cells, change in location of Ac in the chromosome complement, or change in dose action (change in state). Some of the gametes produced by plants carrying Ac will be derived from cells in which such events occurred. Evidence for these statements will appear in the descriptions of the tests conducted with a,"4, The pattern of variegation in the original kernel having a," resembled that expected of mutable a;, Within the aleurone layer, many small areas of color appeared in a colorless background. A plant was grown from this kernel in the greenhouse during the winter of 1951-52, and given the culture number 6110. This plant was: (1) self-pollinated, (2) crossed to two plants having no Ac factor that were a; She/a, sho, (3) crossed toa plant that was 4, She/a; she and carrying a single Ac factor, and (4) crossed to a plant with a genetic constitution designed to test for the presence of Ac in plant 6110. The nature of the Ac tester stocks will be described shortly. The number of crosses con- ducted in the greenhouse was limited. The results of these crosses did indicate. however, that plant 6110 carried a newly arisen alteration at the A, locus; and INSTABILITY AT SELECTED LOCI IN MAIZE 583 that this alteration was responsible for the expressed instability. The constitu- tion of plant 6110 was a,”* Sh2/a, she and it carried one Ac factor. The evi- dence also suggested that the mutations occurring at a,""* were Ac-controlled. From these greenhouse crosses, kernels with appropriate constitutions were selected and plants obtained from them in the summer of 1952 in order that more adequate tests of the nature of the instability could be conducted. The self-pollinated ear of plant 6110 produced 228 kernels with the follow- ing appearances: 7 completely colored, Shy: 129 variegated (exhibiting areas of color in a colorless background), She: 49 colorless, She: 43 colorless, sho. In the crosses to plants that were a; Sh2/ay sha and in which no Ac factor was present, 888 kernels were produced. They could be segregated into the fol- lowing classes: 13 completely colored, Shg: 225 variegated, Sh, : 438 colorless, Sha: 212 colorless, sz. In the cross to the plant that was 41 Sfi2/a, shy and had 1 4c factor, 273 kernels were produced: 145 completely colored, Sha : 1 completely colored, sh. :29 variegated, She : 17 colorless, Shz: 81 colorless, shy. The several distinctive patterns of colored spots exhibited by the varie- gated kernels derived from this latter cross suggested Ac-control of mutability at a,"*, These resembled the patterns produced with single to triple doses of Ac. Kernels with these different doses of Ac were expected to be present on this ear because each parent carried one .4e factor. Other evidence also sug- gested that the mutations were -4c-controlled. This appears in the ratio of variegated to nonvariegated kernels resulting from the cross of plant 6110 to the plants that were a, She/a, she and had no Ac. If Ac were not linked to a,"4, only one-half of the a,"* She carrying gametes produced by plant 6110 would also carry 4c. And, if Ac controls mutation at a,"*, then in only one- half of the a," She carrying kernels could mutations occur, Since ay"+ and Sho are very closely linked, the expected ratio of kernel types from the de- scribed cross should be: 1 variegated, Shz:2 colorless, Sho: 1 colorless, she. The observed ratios were: 225: 438: 212, which is a close approximation to this expectancy. Before presenting the evidence that establishes Ac-control of mutation at a;""4, the phenotypes produced by mutation will be described. The initial change at 4, resulted in complete inhibition of anthocyanin pigment formation in the aleurone layer of the kernel and in the plant tissue. Subsequent mutations occur. Two main classes which result in pigment formation can be recognized. In one class, the mutations reestablish the original phenotypic expression of A,: deep pigmentation in aleurone and plant. In the aleurone layer, the borders of such mutant areas are not precisely defined because of diffusion of pigment forming substances into the surrounding nonmutant cells. This produces * dif- fusion rims” about these mutant areas. Within the second class, the muta- tions give rise to a graded series, with respect to intensity of anthocyanin pigmentation ; from light to relatively dark shades. The borders of areas having these mutations are sharp. Diffusion rims, characteristic of the first class of mutation either are not present or are very weakly expressed. The phenotypes exhibited by the kernels carrying germinal mutations also express these same 584 BARBARA McCLINTOCK two main classes of mutation. In these cases, however, the color intensity in any one kernel is the same throughout the aleurone layer. The plant tissues likewise show a graded series of intensity of pigmentation among the mutant areas. Marked changes in state of a," that result in altered relative frequen- cies of the various types of mutation, were rarely observed. This is in contrast to ay") and a,”°, both of which have produced many modified states, each exhibiting a particular type or types of mutation and/or frequency of type. In order to determine that Ac controls mutation at a", several types of tests must be applied and positive results obtained from each. These are: (1) establishment of the presence of dc in plants showing mutations at a,”"*: (2) establishing that a,)"4 is nonmutable in the absence of 4c but that return to mutability will occur when Ac is again introduced into the nucleus; (3) establishing in this case that it is the same Ac factor known to produce breaks at Ds and to control mutations at other loci of known genic action, which is responsible for controlling mutation. The presence of Ac can be detected because it produces breaks at Ds, wher- ever it may be located, or mutations at some loci of known genic action (see table 6). In order to be able to test readily for the presence of 4c in a particu- lar plant, it has been necessary to develop so-called Ac tester stocks. Many of them utilize genetic markers in the short arm of chromosome 9 affecting the phenotype of the endosperm of the kernel, and also Ds at its standard location in this arm. For illustrative purposes, the test procedure with one such stock may be described. This stock is homozygous for the chromosome 9 endosperm markers I, Shy, Bs and Wx, and for Ds at its standard location, proximal to Wx. CU, inhibitor of aleurone pigment formation; dominant to allele C, re- quired for aleurone color development. Sh, normal development of endosperm ; shy, shrunken endosperm. Bz in presence of C produces dark color in aleurone and plant; with the recessive, bz, color is modified to a bronze shade. Hx pro- duces amylose starch in endosperm and pollen grain which stains blue with I-KI solutions ; no amylose starch produced by recessive, wr, and starch stains red-brown with I-KI solutions. The order of these markers in the short arm of chromosome 9 is: f Sh, Bz H’x Ds centromere.) No Ac factor is present in the plants of this stock. Consequently, no breaks at Ds occur in these plants. If, for example, the Ac constitution of a plant homozygous for C, sh, bs and wx is to be determined, a cross to or by the Ac tester plant is made. If the plant being tested has no Ac, all the kernels on the resulting ear will be color- less, nonshrunken, and H’x. If one Ac is present, half of the gametes produced by the C, shy, bs, wx plant will carry Ac. The other half will have no Ac. The kernels on the resulting ear will exhibit this gametic ratio for Ac. Those that do not have Ac will be totally colorless, nonshrunken, and H’x, Those that have Ac will be variegated. In these kernels, sectors will be present that show the collective recessive phenotype: C, si, bs and wa. These sectors are pro- duced because Ac induces breaks at Ds in the J Shy Bz W’x Ds carrving chro- mosome in some cells during the development of the endosperm. These breaks result in the formation of acentric fragments carrying all of the dominant INSTABILITY AT SELECTED LOCI IN MAIZE 585 markers. The fragment, in each case, is lost to telophase nuclei in subsequent mitoses. Therefore, all cells arising from those in which the-dominant markers have been removed will express the collective phenotype C, sity, bs and wr. If the plant being tested has two .4c factors, located at allelic positions in one homologous pair of chromosomes, all of the kernels resulting from this cross should be variegated. (Usually, however, a small percent of the kernels are nonvariegated either because no dc is present or because of a high dosage action of de which so delays the time of Ds breaks that none occur during the development of the kernel. These conditions arise from transposition or change in state of fc that can occur in a few sporogenous cells of lc carrying plants.) If two de factors are present and these are nonlinked, a ratio approximating 1 nonvariegated to 3 variegated kernels will appear on the ears resulting from the test cross. If more than two Ac factors are present, not only the ratios obtained but also the timing of breaks at Ds may be used to detect the number of Ac factors that are present. In these cases, however, verification must be obtained by progeny tests. The type of test outlined above may be used to detect positions of lc when it is located in the short arm of chromosome 9. For example, plants having the constitution 4c C Sh, Bs W’x/ae C sh, be wy or ones that are C Shy Be Ac lx /C shy bz ac wx have been crossed by Ac tester plants that are homozygous for I, Shy, Bz, wx, Ds and have no Ac. The phenotypes exhibited in the sectors of the variegated kernels on the resulting ears, and the frequency of kernels with sectors of a particular type, indicate in each of these cases, the location of te within the short arm of chromosome 9. Subsequent tests of the progeny arising from the various crossover classes of kernels in each of these two cases, affirm the particular location of ie. Tests showing that 4c controls mutation at a,""* may now be described. Kernels having particular phenotypes were selected from the self-pollinated ear of plant 6110, and from the ears derived from the two crosses described above. In plant 6110, the chromosome 3 factorial constitution was: ay?" Sho/ay she; the chromosome 9 factorial constitution was: C Hx/C wx. The necessity for indicating this latter constitution will become apparent as the tests are de- scribed. One .4c was present in plant 6110 but it was not linked to the marker in chromosome 9 and appeared not to be linked to those in chromosome 3. Four classes of kernels were selected from the self-pollinated ear: (1) color- less, Sho, Wx, (2) colorless, Shy, wx, (3) variegated, Sh, Wx, and (4) varie- gated, Sh», wx. Since the locus of Shz is very close to that of a,""*, plants derived from the first two classes of kernels were expected to be either ay” Shs /ayt Shy or ay”* She/ay she in constitution and to carry no ele fac- tor. Those derived from types (3) and (4) above were expected to have either of these two constitutions with respect to markers in chromosome 3; they should have, however, either one or two 4c factors, and if two, these should be located, in the majority of such plants, at allelic positions in one pair of homologues. The constitutions with respect to siz in the plants derived from the above TABLE 1 Constitution of plants of culture 6424 (column 1) and types of crosses (columns 3 to 8). that bave revealed these constitutions for each plant, Crosses with plants of constitutions given in column headings sos Plant Self- a,sh,/a,sh a, Sh,/a, sh. a, Sh,/a, Sh Ac tester a,/a Constitution of plant no. pollinated “No Ac "No Ac "No Ac plant Ac a, Sh,/a,™* Sh,; No Ac 1 + + + (plants 1 to 5) 2 + 3 + + + + 4 + + + 5 + + + a,” Sh,/a,"~* Shy; 1 Ac 6 + + (plants 6 to 8) 7 + + 8 + a," Sh,/a™™ Shy; 2 Ac 9 + + + + a,"~* Sh,/a, shy; No Ac 10 + + (plants 10 to 17) 11 + + 13 + + + + 13 + + + 14 + + + 15 + + + 16 + + + + 17 + + + + a" Sh,/a, shy; 1 Ac 18 + (plants 18 to 25) 19 + + + + . 20 + + + + + 21 + + + 22 + + + 23 + + 24 + + + + 25 + : a," Sb,/a, shy; 2 Ac 26 + + + + (plants 26 to 29) 27 + + + + 28 + + 29 + 98S MDOLNIIDW VaVEUVa INSTABILITY AT SELECTED LOCI IN MAIZE 587 selected kernels were determined by crosses to plants that were either a; she /ay she or a She/a, she. (Supply of plants of the former. constitution was limited due to early death from disease of many of them. In some of the tests it was necessary, therefore, to substitute plants of the latter constitution.) Ac constitutions were determined for many of them by crosses with Ac tester stocks. Detection of the presence of a,"* in plants derived from the colorless kernels required the introduction of Ac. For this purpose, plants that were homozygous for a, and that carried one or more Ac factors were used in crosses with the plants derived from these kernels. To show that the factor controlling mutation at a,”"* is the same as that which controls breaks at Ds, TABLE 2 Ac constitution of gametes of plants of culture 6424 (table 1) determined by crosses to plants’ of Ac-tester stock, Constitution of tester stock: 1Ds/IDs; A,/Ay no Ac. Plant Parentage Kernel types on resulting ear Ac constitution no. in of 6424 - of plant culture plant in Colorless Variegated: colored areas in 6424 cross (no Ac) colorless background (Ac) Group I, No Ac 3 é 324 0 5 co 128 0 12 3 260 0 14 é 123 0 15 3 11 0 16 3 216 0 Group I, 1 Ac 6 3 251 248 7 3 252 288 19 3 377 397 20 3 135 142 20 3 206 188 21 2 151 135 22 $ 154 128 23 g 42 46 23 é 145 134: 24 So 182 191 Group III, 2 Ac 9 $ 47 410 26 3 15 457 27 3 23 434 some plants arising from the colorless, Sho, w+ class of kernels were crossed by plants with the constitution : a,/a,; Wa Ds/we ds;1 Ac. The Ac factor was not linked to markers in chromosome 9. The constitutions of 29 plants in the progeny derived from self-pollination of plant 6110 are entered in table 1 along with the tests conducted with each plant that served to indicate its constitution. These plants were grown in cul- ture number 6424. Nine plants in culture 6424 were a,"* S ho/ay™* Shy. Five of them had no 4c (plants 1 to 5, table 1), three had one de (plants 6 to 8, table 1) and one had two Ac factors (plant 9, table 1). Twenty plants in cul- ‘ture 6424 were a," Sho/a; sho and among them, eight had no dc (plants 10 to 17), eight had one Ac (plants 18 to 25), and four had two Ac factors 588 BARBARA McCLINTOCK TABLE 3 Types of kernels appearing on ears resulting from crosses of plants of culture 6424 (table 1) with tester plants having constitutions entered in column I. Part 1; Tester plants have no Ac. Part Il: Tester plants have 1 or 2 Ac factors. Parel Constitution Plant Parentage Kernel types of tester nl in ef 6424 Colored Colored Varie- Varie- Colore Colore Totals plants “E404. plant in Sh, ° ih gated gated less less bahia 2 SO Sb, shy Shy sh, 41 hy/a, sh, 1 2 0 0 0 0 230 0 230 No Ac 3 2 0 0 0 0 133 Oo 133 3 3 0 0 0 0 573 0 $73 4 2 0 0 0 ) 298 0 298 Totals, plants 1 to 4 0 0 0 0 1234 QO 1234 6 g 1 0 132.0 126 0 259 6 3 7 0 507 0 554 0 1068 7 g 1 0 1332, 0 151 0 284 7 é 15 0 275 0 295 0 585 8 9 3 0 168.0 188 0 359 Totals, plants 6 to 8 27 0 1214 0 1314 0 2555 9 é 26 0 584 0 95 0 705 12 2 0 0 0 0 120 125 = 245 16 2 ) 0 0 0 131 120-251 16 o 0 0 0 0 144 «137,281 17 g 0 0 ) 0 65 55-120 Totals, plants 12 to 17 0 0 0 0 460 437 897 18 g ) 0 75 0 73 134-282 19 g 3 0 62. 0 83 167 315 19 é 12 ) 199 ) 216 =90375~—s« 802 20 9 0 0 53 0 58 114 225 20 3 12 0 2340 267 444—